QligFEP: an automated workflow for small molecule free energy calculations in Q | Journal of Cheminformatics | Full Text
Graphical User Interface Quickstart — SilcsBio User Guide
How to overcome the error: "CGenFF versions are not equivalent!" in running Gromacs? | ResearchGate
How to generate CHARMM force field for GROMACS using CGenFF? | ResearchGate
CGenFF: CHARMM General Force Field — SilcsBio User Guide
Automation of the CHARMM General Force Field (CGenFF) I: Bond Perception and Atom Typing | Semantic Scholar
Validation of the Generalized Force Fields GAFF, CGenFF, OPLS-AA, and PRODRGFF by Testing Against Experimental Osmotic Coefficient Data for Small Drug-Like Molecules | Journal of Chemical Information and Modeling
Additive CHARMM force field for naturally occurring modified ribonucleotides - Xu - 2016 - Journal of Computational Chemistry - Wiley Online Library
CHARMM force field parameters for 2'-hydroxybiphenyl-2-sulfinate, 2-hydroxybiphenyl, and related analogs
cgenff - YouTube
molecular dynamics - Alternative to CGenFF for generating large ligand topology - Matter Modeling Stack Exchange
GitHub - jandom/paramchem: Python scrapper for paramche/cgenff server, small molecule parametrization
NAMD QM/MM (CGenFF) - Adrea's Notebook and Journal
Frontiers | Relative binding free energy calculations with transformato: A molecular dynamics engine-independent tool
Evaluation of nine condensed-phase force fields of the GROMOS, CHARMM, OPLS, AMBER, and OpenFF families against experimental cross-solvation free ener ... - Physical Chemistry Chemical Physics (RSC Publishing) DOI:10.1039/D1CP00215E
Assessing the quality of absolute hydration free energies among CHARMMcompatible ligand parameterization schemes
Precise force-field-based calculations of octanol-water partition coefficients for the SAMPL7 molecules | SpringerLink
RESNAME error while using cgenff python script - User discussions - GROMACS forums
Protein-Ligand Simulation Using GROMACS - 作业部落 Cmd Markdown 编辑阅读器
Problem while generating JZ4 Topology with CGenFF - User discussions - GROMACS forums
CGenFF
CHARMM force field parameters for 2′-hydroxybiphenyl-2-sulfinate, 2-hydroxybiphenyl, and related analogs - ScienceDirect
CGenFF Server Ligand Penalties - User discussions - GROMACS forums
Automation of the CHARMM General Force Field (CGenFF) I: Bond Perception and Atom Typing | Semantic Scholar
How to overcome the error: "CGenFF versions are not equivalent!" in running Gromacs? | ResearchGate
Evaluation of nine condensed-phase force fields of the GROMOS, CHARMM, OPLS, AMBER, and OpenFF families against experimental cross-solvation free ener ... - Physical Chemistry Chemical Physics (RSC Publishing) DOI:10.1039/D1CP00215E
